.. CS-Sea-CATG documentation master file, created by
   sphinx-quickstart on Tue Jul 27 14:48:17 2021.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

========================================================
A primer on embarking on computational research projects
========================================================

Follow the links below to start to dive into some of the topics covered on this site.

.. toctree::
   :maxdepth: 2
   :caption: Contents:
   
   getting-started-poseidon.md
   using-snakemake.md
   using-rclone.md
   ssh-tunneling.md

Getting help
------------

In addition to this resource, there are a number of other really awesome sources of content out there about how to get around on the command line and with research. These include `Software Carpentries <https://software-carpentry.org/>`_ for computing and data-based lessons and `VisuAlgo <https://visualgo.net/en>`_ for bioinformatics algorithms.

Resources for WHOI-based students
---------------------------------

- Submitting jobs to the `Poseidon Cluster <https://whoi-it.whoi.edu/managing-and-monitoring-jobs-on-poseidon>`_